Alexander Hall

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  • in reply to: #1641
    Alexander Hall

      Here are some links to 3DEM Raw and annotated data. Please reply with additional databases for us to see and explore.
      webKnossos : Browser-based 3DEM Database
      Virtual Fly Brain : Browser-based fly (Drosophila melanogaster) brain data browser
      WormImage : C. elegans microscopy data
      WormWiring: C. elegans nerve wiring browser and data repository; neuron
      FlyEM: HHMI Janelia Drosophila brain reference data and browser; neuron
      CATMAID: Online data annotation tool. Links to many large datasets.
      Figshare : Generic data repository for anyone to use
      Dryad : Generic data repository for data associated with publications
      TrakEM2: ImageJ plugin that has associated ssTEM test data
      Mitochondrial Segmentation : Data from this paper includes segmentation data from the “Rat Brain Dataset” listed here
      The Materials Project : Simulation focused materials research repository
      LimeSeg Test Datasets : Data associated with the paper for LimeSeg. Includes 3DEM HeLa cell.
      Mendeley Data: Generic data repository associated with Mendeley
      National Center for Microscopy and Imaging Research : News about UCSD’s research. Includes many cryoEM and SBFI papers.
      BiteSize Bio Webinars: Great webinars on microscopy and image analysis. Focus on biomedical sciences.
      3D Histology of Mouse Heart : High resolution serial histology of a mouse heart

      • This reply was modified 4 years, 1 month ago by Alexander Hall.
      • This reply was modified 4 years, 1 month ago by Alexander Hall. Reason: Fixed links
      in reply to: Computational infrastructure and considerations #796
      Alexander Hall

        Light sheet microscopy, computed tomography, and next-gen sequencing techniques are also generating huge (>20 Gb-multiple Tb) datasets. If you have colleagues working with these data types, it would be worth collaborating for data storage solutions, IMO.

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